STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc17Leucine-rich repeat-containing 17. (435 aa)    
Predicted Functional Partners:
ablim1b
Actin-binding LIM protein 1b.
      
 0.936
ccdc69
Coiled-coil domain-containing protein 69; May act as a scaffold to regulate the recruitment and assembly of spindle midzone components; Belongs to the CCDC69 family.
      
 0.860
ncam3
Neural cell adhesion molecule 3.
   
 
 0.760
nptna
Zgc:162565 protein.
    
 
 0.727
fbxl13
F-box and leucine-rich repeat protein 13.
      
 0.721
nptnb
Neuroplastin b.
    
 
 0.705
man2a2
Alpha-mannosidase.
      
 0.645
sestd1
SEC14 domain and spectrin repeat-containing protein 1; May act as the primary docking protein directing membrane turnover and assembly of the transient receptor potential channels trpc4 and trpc5. Binds phospholipids (By similarity); Belongs to the SOLO family.
      
 0.617
CAMK2N1
Si:dkey-33m11.6.
      
 0.604
kirrel1a
Kirre-like nephrin family adhesion molecule 1a.
    
 
 0.571
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.