STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1A; Belongs to the SKP1 family.
   
 0.999
cul3a
Cullin 3a; Belongs to the cullin family.
    
 
 0.999
eloca
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.999
cul1a
Cullin 1a; Belongs to the cullin family.
    
 0.999
elocb
Elongin C paralog b; Belongs to the SKP1 family.
   
 0.999
cul1b
Cullin 1b; Belongs to the cullin family.
   
 0.999
cul2
Cullin 2; Belongs to the cullin family.
    
 0.999
ddb1
Damage-specific DNA-binding protein 1.
   
 0.999
cul4a
Cullin 4A; Belongs to the cullin family.
    
 0.999
cul3b
Cullin 3b; Belongs to the cullin family.
    
 0.999
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.