Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddx5DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (617 aa)    
Predicted Functional Partners:
drosha
Drosha ribonuclease III.
  
 0.987
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.960
alyref
Aly/REF export factor.
   
 0.950
rbm39a
RNA-binding motif protein 39a.
   
 0.941
dhx8
DEAH (Asp-Glu-Ala-His) box polypeptide 8.
   
 0.938
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 
 0.920
mtrex
Mtr4 exosome RNA helicase.
   
 0.908
rbm25b
RNA-binding motif protein 25b.
   
 0.898
ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.
  
0.885
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.883
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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