Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcl1RNA terminal phosphate cyclase-like 1. (367 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.999
pwp2h
PWP2 small subunit processome component.
   
 
 0.995
bysl
Bystin-like.
   
 
 0.993
imp4
IMP4, U3 small nucleolar ribonucleoprotein, homolog (Yeast).
   
 
 0.991
wdr43
WD repeat domain 43.
   
 
 0.990
noc4l
Nucleolar complex protein 4 homolog.
   
 
 0.989
wdr3
WD repeat domain 3.
   
 
 0.988
utp3
UTP3 small subunit processome component.
   
 
 0.988
tbl3
Transducin beta-like 3.
   
 
 0.987
utp18
UTP18 small subunit processome component.
   
 
 0.986
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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