STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpr160Similar to Probable G-protein coupled receptor 160. (298 aa)    
Predicted Functional Partners:
samd7
Sterile alpha motif domain-containing 7.
   
  
 0.797
sec62
SEC62 homolog, preprotein translocation factor.
      
 0.786
cops9
COP9 signalosome complex subunit 9; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF- type E3 ligase complexes, leading to decrease the Ubl ligase activity. May play a role in cell proliferation.
      
 0.748
golim4b
Golgi integral membrane protein 4b.
      
 0.745
phc3
Polyhomeotic homolog 3 (Drosophila).
      
 0.745
skila
SKI-like proto-oncogene a.
      
 0.744
nadkb
NAD kinase b.
      
 0.730
selenot1b
Thioredoxin reductase-like selenoprotein T1b; Selenoprotein with thioredoxin reductase-like oxidoreductase activity.
      
 0.729
colgalt2
Novel protein similar to vertebrate glycosyltransferase 25 domain containing 1 (GLT25D1).
      
 0.715
bbof1
Basal body-orientation factor 1; Basal body protein required in multiciliate cells to align and maintain cilia orientation in response to flow. May act by mediating a maturation step that stabilizes and aligns cilia orientation. Not required to respond to planar cell polarity (PCP) or flow-based orientation cues (By similarity); Belongs to the BBOF1 family.
      
 0.711
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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