Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
mysm1 | pdcd7 | ENSDARP00000107103 | ENSDARP00000056892 | Histone H2A deubiquitinase MYSM1; Metalloprotease that specifically deubiquitinates monoubiquitinated histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Preferentially deubiquitinates monoubiquitinated H2A in hyperacetylated nucleosomes. Deubiquitination of histone H2A leads to facilitate the phosphorylation and dissociation of histone H1 from the nucleosome. Acts as a coactivator by participating in the initiation and elongation steps of androgen receptor (AR)-induced gene activation (By similarity). | Programmed cell death 7. | 0.658 |
pdcd6 | pdcd7 | ENSDARP00000009990 | ENSDARP00000056892 | Programmed cell death 6. | Programmed cell death 7. | 0.758 |
pdcd7 | mysm1 | ENSDARP00000056892 | ENSDARP00000107103 | Programmed cell death 7. | Histone H2A deubiquitinase MYSM1; Metalloprotease that specifically deubiquitinates monoubiquitinated histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Preferentially deubiquitinates monoubiquitinated H2A in hyperacetylated nucleosomes. Deubiquitination of histone H2A leads to facilitate the phosphorylation and dissociation of histone H1 from the nucleosome. Acts as a coactivator by participating in the initiation and elongation steps of androgen receptor (AR)-induced gene activation (By similarity). | 0.658 |
pdcd7 | pdcd6 | ENSDARP00000056892 | ENSDARP00000009990 | Programmed cell death 7. | Programmed cell death 6. | 0.758 |
pdcd7 | snrnp25 | ENSDARP00000056892 | ENSDARP00000006492 | Programmed cell death 7. | Small nuclear ribonucleoprotein 25. | 0.850 |
pdcd7 | snrnp35 | ENSDARP00000056892 | ENSDARP00000135151 | Programmed cell death 7. | U11/U12 small nuclear ribonucleoprotein 35 kDa protein. | 0.909 |
pdcd7 | snrnp48 | ENSDARP00000056892 | ENSDARP00000136650 | Programmed cell death 7. | Small nuclear ribonucleoprotein 48 (U11/U12). | 0.859 |
pdcd7 | snrpe | ENSDARP00000056892 | ENSDARP00000050295 | Programmed cell death 7. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. | 0.646 |
pdcd7 | snrpf | ENSDARP00000056892 | ENSDARP00000134257 | Programmed cell death 7. | Small nuclear ribonucleoprotein polypeptide F. | 0.646 |
pdcd7 | snrpg | ENSDARP00000056892 | ENSDARP00000133036 | Programmed cell death 7. | Small nuclear ribonucleoprotein G. | 0.625 |
pdcd7 | ybx1 | ENSDARP00000056892 | ENSDARP00000010482 | Programmed cell death 7. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.800 |
pdcd7 | zmat5 | ENSDARP00000056892 | ENSDARP00000051356 | Programmed cell death 7. | Zinc finger matrin-type protein 5. | 0.577 |
snrnp25 | pdcd7 | ENSDARP00000006492 | ENSDARP00000056892 | Small nuclear ribonucleoprotein 25. | Programmed cell death 7. | 0.850 |
snrnp25 | snrnp35 | ENSDARP00000006492 | ENSDARP00000135151 | Small nuclear ribonucleoprotein 25. | U11/U12 small nuclear ribonucleoprotein 35 kDa protein. | 0.899 |
snrnp25 | snrnp48 | ENSDARP00000006492 | ENSDARP00000136650 | Small nuclear ribonucleoprotein 25. | Small nuclear ribonucleoprotein 48 (U11/U12). | 0.962 |
snrnp25 | snrpe | ENSDARP00000006492 | ENSDARP00000050295 | Small nuclear ribonucleoprotein 25. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. | 0.499 |
snrnp25 | snrpf | ENSDARP00000006492 | ENSDARP00000134257 | Small nuclear ribonucleoprotein 25. | Small nuclear ribonucleoprotein polypeptide F. | 0.627 |
snrnp25 | snrpg | ENSDARP00000006492 | ENSDARP00000133036 | Small nuclear ribonucleoprotein 25. | Small nuclear ribonucleoprotein G. | 0.552 |
snrnp25 | ybx1 | ENSDARP00000006492 | ENSDARP00000010482 | Small nuclear ribonucleoprotein 25. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.800 |
snrnp25 | zmat5 | ENSDARP00000006492 | ENSDARP00000051356 | Small nuclear ribonucleoprotein 25. | Zinc finger matrin-type protein 5. | 0.864 |
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