Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
im:7138239Im:7138239. (313 aa)    
Predicted Functional Partners:
admp
Anti-dorsalizing morphogenic protein.
 
  
 0.765
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.743
nfyba
Nuclear transcription factor Y, beta a.
   
 0.651
nfybb
Nuclear transcription factor Y, beta b.
   
 0.651
nfya
Nuclear transcription factor Y, alpha.
    
 0.645
nfyal
Nuclear transcription factor Y, alpha,-like.
    
 0.645
ptpmt1
Protein tyrosine phosphatase, mitochondrial 1.
      
 0.505
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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