STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfybaNuclear transcription factor Y, beta a. (204 aa)    
Predicted Functional Partners:
nfyc
Nuclear transcription factor Y, gamma.
   
 0.954
nfya
Nuclear transcription factor Y, alpha.
   
 0.926
nfyal
Nuclear transcription factor Y, alpha,-like.
   
 0.926
chrac1
Chromatin accessibility complex subunit 1.
   
 
 0.829
im:7138239
Im:7138239.
   
 
 0.784
nfybb
Nuclear transcription factor Y, beta b.
  
  
 
0.544
pole4
Polymerase (DNA-directed), epsilon 4, accessory subunit.
    
 
 0.541
gata3
Transcription factor GATA-3.
    
 
 0.538
gata2a
GATA-binding protein 2a.
    
 
 0.538
gata2b
GATA-binding protein 2b.
    
 
 0.538
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.