Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vti1bVesicle transport through interaction with t-SNAREs homolog 1B (Yeast). (225 aa)    
Predicted Functional Partners:
stx6
Stx6 protein; Belongs to the syntaxin family.
   
 0.999
stx7l
Syntaxin 7-like; Belongs to the syntaxin family.
   
 0.999
vamp4
Vesicle-associated membrane protein 4.
   
 0.999
stx8
Stx8 protein.
   
 0.999
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
0.997
vamp8
Vesicle-associated membrane protein 8 (Endobrevin).
   
 0.996
sybl1
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.995
stx10
Syntaxin 10.
   
 0.994
ykt6
Synaptobrevin homolog YKT6; Vesicular soluble NSF attachment protein receptor (v-SNARE) mediating vesicle docking and fusion to a specific acceptor cellular compartment. Functions in endoplasmic reticulum to Golgi transport; as part of a SNARE complex composed of GOSR1, GOSR2 and STX5. Functions in early/recycling endosome to TGN transport; as part of a SNARE complex composed of BET1L, GOSR1 and STX5. Has a S-palmitoyl transferase activity.
   
 0.994
stx12l
Syntaxin 12,-like; Belongs to the syntaxin family.
   
 0.994
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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