Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbln5Fibulin 5. (477 aa)    
Predicted Functional Partners:
elnb
Elastin b.
    
 
 0.944
loxl1
Lysyl oxidase-like 1.
   
  
 0.786
ccdc186
Si:ch211-225b10.4.
      
 0.687
mfap4
Microfibril-associated protein 4.
   
 0.650
mfap5
Microfibril-associated protein 5.
     
 0.641
bgna
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
   
 0.614
vtnb
Vitronectin b.
    
 0.613
loxa
Lysyl oxidase a.
   
  
 0.613
RIN2
Si:ch211-85n16.4.
    
 
 0.600
postnb
Periostin, osteoblast-specific factor b.
   
  
 0.585
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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