STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccndbp1Cyclin-D1-binding protein 1 homolog; May negatively regulate cell cycle progression. Belongs to the CCNDBP1 family. (344 aa)    
Predicted Functional Partners:
syf2
Pre-mRNA-splicing factor syf2; Involved in pre-mRNA splicing as component of the spliceosome.
    
 
 0.681
lrrc57
Leucine-rich repeat-containing protein 57.
      
 0.669
zfyve19
Zinc finger, FYVE domain-containing 19.
   
  
 0.631
dnajc17
DnaJ (Hsp40) homolog, subfamily C, member 17.
   
 
 0.595
tmpob
Thymopoietin b.
    
 
 0.591
zgc:92287
Zgc:92287.
    
 
 0.591
serf2
Small EDRK-rich factor 2.
      
 0.565
ivd
Novel protein similar to human isovaleryl Coenzyme A dehydrogenase (IVD).
   
 0.563
zgc:171480
Zgc:171480.
      
 0.561
aasdh
Beta-alanine-activating enzyme; Covalently binds beta-alanine in an ATP-dependent manner to form a thioester bond with its phosphopantetheine group and transfers it to an, as yet, unknown acceptor. May be required for a post- translational protein modification or for post-transcriptional modification of an RNA.
  
 0.561
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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