STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
drg1Developmentally-regulated GTP-binding protein 1. (366 aa)    
Predicted Functional Partners:
zc3h15
Zinc finger CCCH domain-containing protein 15; Protects drg1 from proteolytic degradation.
   
 
 0.998
knop1
Lysine-rich nucleolar protein 1.
   
  
 0.977
sdk1b
Sidekick cell adhesion molecule 1b.
      
 0.951
rwdd1
RWD domain-containing 1.
   
 
 0.950
matk
Tyrosine-protein kinase.
      
 0.861
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
   0.855
rpl8
60S ribosomal protein L8; Component of the large ribosomal subunit.
   
 
 0.855
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
   0.851
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10; Belongs to the universal ribosomal protein uL10 family.
  
 
 0.845
rwdd
RWD domain-containing 4.
   
 
 0.838
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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