STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrhRetinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family. (379 aa)    
Predicted Functional Partners:
parietopsin-2
Parietopsin.
      
 0.877
sult1st7
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.715
gpr52
G protein-coupled receptor 52; Belongs to the G-protein coupled receptor 1 family.
      
 0.694
E7F3D1_DANRE
Si:ch211-253p18.5.
      
 0.650
gpr139
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.633
map6d1
MAP6 domain-containing 1.
    
 0.629
iffo1b
Intermediate filament family orphan 1b; Belongs to the intermediate filament family.
      
 0.596
lrit3a
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
 
 
 0.584
rarres3l
Retinoic acid receptor responder 3-like.
      
 0.559
rfxap
Regulatory factor X-associated protein.
      
 0.547
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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