STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a33Solute carrier family 25 member 33; Mitochondrial transporter that imports/exports pyrimidine nucleotides into and from mitochondria which participates in dendritic cell endocytosis; Belongs to the mitochondrial carrier (TC 2.A.29) family. (314 aa)    
Predicted Functional Partners:
pkdcca
Protein kinase domain-containing, cytoplasmic a.
      
 0.731
prelid3b
Chromosome 20 open reading frame 45.
   
  
 0.667
TP53I3
Tumor protein p53 inducible protein 3.
   
  
 0.625
slc23a1
Solute carrier family 23 member 1.
  
  
 0.615
arl4ab
ADP-ribosylation factor-like 4, like.
   
  
 0.594
slc6a17
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
   
  
 0.566
hsdl2
Hydroxysteroid dehydrogenase-like protein 2; Has apparently no steroid dehydrogenase activity. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.544
cpn1
Carboxypeptidase N, polypeptide 1.
   
  
 0.483
cpn1-2
Carboxypeptidase N, polypeptide 1.
      
 0.482
insm1b
Insulinoma-associated protein 1b; May act as a transcriptional regulator. May play a role in neurogenesis and neuroendocrine cell differentiation during embryonic development (By similarity).
      
 0.481
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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