Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rai14Retinoic acid-induced 14. (988 aa)    
Predicted Functional Partners:
efs
Embryonal Fyn-associated substrate.
    
 0.848
dhrs13a.3
Dehydrogenase/reductase (SDR family) member 13a, duplicate 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.826
smim8
Small integral membrane protein 8.
      
 0.798
mon2
MON2 homolog, regulator of endosome-to-Golgi-trafficking.
    
 
 0.755
rbp1.2
Retinol-binding protein 1, cellular, tandem duplicate 2; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
     
 0.737
patl2
PAT1 homolog 2.
    
 
 0.683
riok2
RIO kinase 2 (yeast).
   
  
 0.669
atp8b2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.661
kif9
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.634
kif6
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.634
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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