STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rai14Retinoic acid-induced 14. (988 aa)    
Predicted Functional Partners:
dhrs13a.3
Dehydrogenase/reductase (SDR family) member 13a, duplicate 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.878
efs
Embryonal Fyn-associated substrate.
    
 
 0.842
patl2
PAT1 homolog 2.
    
 
 0.837
rbp1.2
Retinol-binding protein 1, cellular, tandem duplicate 2; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.835
crabp2b
Duplicated cellular retinoic acid-binding protein 2b; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.644
col17a1b
Collagen, type XVII, alpha 1b.
    
 
 0.616
col17a1a
Collagen, type XVII, alpha 1a.
    
 
 0.608
greb1
Growth-regulating estrogen receptor-binding 1.
      
 0.561
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
 0.555
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
 
 0.505
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.