STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gzmaGranzyme A; Belongs to the peptidase S1 family. (257 aa)    
Predicted Functional Partners:
gzmk
Granzyme K.
  
  
0.804
agrn
Agrin.
   
 0.723
nkl.4
NK-lysin tandem duplicate 4.
   
  
 0.668
gzm3.2
Granzyme 3, tandem duplicate 2.
  
  
0.609
gzm3
Granzyme 3, tandem duplicate 1; Belongs to the peptidase S1 family.
  
  
0.601
ctrb1
Chymotrypsinogen B1; Belongs to the peptidase S1 family.
  
 
0.592
LOC562139
Similar to chymotrypsinogen B1; Belongs to the peptidase S1 family.
  
 
0.590
nkl.1
NK-lysin tandem duplicate 2.
   
  
 0.589
gzm3.4
Granzyme 3, tandem duplicate 4.
  
  
0.586
zgc:112160
Zgc:112160; Belongs to the peptidase S1 family.
  
 
0.584
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.