Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
scpep1Carboxypeptidase; Belongs to the peptidase S10 family. (445 aa)    
Predicted Functional Partners:
ahdc1
AT hook, DNA-binding motif,-containing 1.
      
 0.607
si:dkey-31g6.6
Si:dkey-31g6.6.
      
 0.603
ifi30
Gamma-interferon-inducible lysosomal thiol reductase; Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Belongs to the GILT family.
   
  
 0.565
ifitm1
Novel interferon-induced transmembrane protein.
   
 0.563
morf4l1
Mortality factor 4-like 1.
    
   0.546
lgmn
Legumain.
   
  
 0.533
smtnl
Smoothelin,-like.
   
 
 0.480
ly86
Lymphocyte antigen 86.
   
  
 0.480
dgke
Diacylglycerol kinase.
      
 0.477
sh3kbp1
SH3-domain kinase-binding protein 1.
   
   0.468
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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