STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpep1Carboxypeptidase; Belongs to the peptidase S10 family. (445 aa)    
Predicted Functional Partners:
lgmn
Legumain.
   
  
 0.585
slc10a2
Solute carrier family 10 (Sodium/bile acid cotransporter family), member 2.
   
  
 0.524
kif16ba
Kinesin family member 16Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.481
ahdc1
AT hook, DNA-binding motif,-containing 1.
      
 0.469
psma5
Proteasome subunit alpha type.
   
  
 0.466
pttg1ipb
Pituitary tumor-transforming 1 interacting protein.
   
  
 0.453
snx22
Sorting nexin 22.
      
 0.431
snx24
Sorting nexin 24.
      
 0.430
snx21
Sorting nexin family member 21.
      
 0.430
erlec1
Endoplasmic reticulum lectin 1.
   
 
 0.428
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.