Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
zp3d.1Zona pellucida glycoprotein 3d tandem duplicate 1. (599 aa)    
Predicted Functional Partners:
mkrn4
Makorin, ring finger protein, 4.
    
 
 0.881
srsf1b
Serine/arginine-rich splicing factor 1B; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family.
   
 0.775
cldna
Claudin a.
      
 0.664
E9QBK2_DANRE
Si:ch73-160h15.3.
      
 0.662
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
   
 
 0.499
g3bp1
GTPase-activating protein (SH3 domain)-binding protein 1.
      
 0.484
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
  
 0.481
fkbp7
Peptidylprolyl isomerase.
      
 0.462
fhl2a
Four and a half LIM domains 2a.
      
 0.447
sox32
SRY-box transcription factor 32.
   
  
 0.447
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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