STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam210abUncharacterized protein C18orf19 homolog B. (280 aa)    
Predicted Functional Partners:
hibadha
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
   
  
 0.839
hibadhb
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
   
  
 0.838
ldlrad4b
Low density lipoprotein receptor class A domain-containing 4b.
      
 0.832
foxi2
Forkhead box I2.
   
  
 0.673
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
      
 0.506
LOC567790
Dynein, axonemal, heavy chain 11.
      
 0.480
ldhba
L-lactate dehydrogenase B-A chain; Belongs to the LDH/MDH superfamily. LDH family.
      
 0.480
dnah11
Dynein, axonemal, heavy chain 11.
      
 0.480
gfm1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
   
    0.472
dnah5
Dynein, axonemal, heavy chain 5.
      
 0.453
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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