Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
scamp5bSecretory carrier-associated membrane protein. (230 aa)    
Predicted Functional Partners:
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
      
 0.689
TMCC1
Transmembrane and coiled-coil domain family 1.
      
 0.662
dennd1a
DENN/MADD domain-containing 1A.
      
 0.544
scamp3
Secretory carrier-associated membrane protein.
    
   0.536
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 
 0.469
rab2a
RAB2A, member RAS oncogene family.
   
 
 0.448
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
      
 0.434
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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