STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psphPhosphoserine phosphatase. (249 aa)    
Predicted Functional Partners:
psat1
Phosphoserine aminotransferase.
  
 
 0.998
shmt2
Serine hydroxymethyltransferase 2 (mitochondrial).
  
 0.993
shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 0.987
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.977
agxtb
Serine--pyruvate aminotransferase.
   
 0.972
agxta
Serine--pyruvate aminotransferase.
   
 0.972
ENSDARP00000134442
PALP domain-containing protein.
    
 0.956
sdsl
Serine dehydratase-like.
    
 0.955
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.952
sptlc2a
Serine palmitoyltransferase, long chain base subunit 2a.
    
 0.940
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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