Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
faap100 | nsfl1c | ENSDARP00000127337 | ENSDARP00000155350 | Si:dkey-57h18.1. | NSFL1 (p97) cofactor (p47). | 0.713 |
faap100 | rad23ab | ENSDARP00000127337 | ENSDARP00000076407 | Si:dkey-57h18.1. | RAD23 homolog A, nucleotide excision repair protein b. | 0.550 |
faap100 | ube4a | ENSDARP00000127337 | ENSDARP00000059375 | Si:dkey-57h18.1. | Ubiquitination factor E4A (UFD2 homolog, yeast). | 0.821 |
faap100 | ubqln4 | ENSDARP00000127337 | ENSDARP00000069405 | Si:dkey-57h18.1. | Ubiquilin 4. | 0.567 |
faap100 | ufd1l | ENSDARP00000127337 | ENSDARP00000035108 | Si:dkey-57h18.1. | Ubiquitin recognition factor in ER-associated degradation 1. | 0.942 |
faap100 | yod1 | ENSDARP00000127337 | ENSDARP00000003565 | Si:dkey-57h18.1. | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.911 |
nploc4 | nsfl1c | ENSDARP00000133068 | ENSDARP00000155350 | Nuclear protein localization 4 homolog (S. cerevisiae). | NSFL1 (p97) cofactor (p47). | 0.886 |
nploc4 | rad23ab | ENSDARP00000133068 | ENSDARP00000076407 | Nuclear protein localization 4 homolog (S. cerevisiae). | RAD23 homolog A, nucleotide excision repair protein b. | 0.550 |
nploc4 | ube4a | ENSDARP00000133068 | ENSDARP00000059375 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitination factor E4A (UFD2 homolog, yeast). | 0.825 |
nploc4 | ubqln4 | ENSDARP00000133068 | ENSDARP00000069405 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquilin 4. | 0.601 |
nploc4 | ufd1l | ENSDARP00000133068 | ENSDARP00000035108 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitin recognition factor in ER-associated degradation 1. | 0.998 |
nploc4 | yod1 | ENSDARP00000133068 | ENSDARP00000003565 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.918 |
nsfl1c | faap100 | ENSDARP00000155350 | ENSDARP00000127337 | NSFL1 (p97) cofactor (p47). | Si:dkey-57h18.1. | 0.713 |
nsfl1c | nploc4 | ENSDARP00000155350 | ENSDARP00000133068 | NSFL1 (p97) cofactor (p47). | Nuclear protein localization 4 homolog (S. cerevisiae). | 0.886 |
nsfl1c | ube4a | ENSDARP00000155350 | ENSDARP00000059375 | NSFL1 (p97) cofactor (p47). | Ubiquitination factor E4A (UFD2 homolog, yeast). | 0.875 |
nsfl1c | ufd1l | ENSDARP00000155350 | ENSDARP00000035108 | NSFL1 (p97) cofactor (p47). | Ubiquitin recognition factor in ER-associated degradation 1. | 0.978 |
nsfl1c | yod1 | ENSDARP00000155350 | ENSDARP00000003565 | NSFL1 (p97) cofactor (p47). | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.982 |
rad23ab | faap100 | ENSDARP00000076407 | ENSDARP00000127337 | RAD23 homolog A, nucleotide excision repair protein b. | Si:dkey-57h18.1. | 0.550 |
rad23ab | nploc4 | ENSDARP00000076407 | ENSDARP00000133068 | RAD23 homolog A, nucleotide excision repair protein b. | Nuclear protein localization 4 homolog (S. cerevisiae). | 0.550 |
rad23ab | trip12 | ENSDARP00000076407 | ENSDARP00000082000 | RAD23 homolog A, nucleotide excision repair protein b. | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | 0.707 |
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