Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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[Homology]
Score
khdc4KH homology domain-containing protein 4; RNA-binding protein involved in pre-mRNA splicing. Interacts with the PRP19C/Prp19 complex/NTC/Nineteen complex which is part of the spliceosome. Involved in regulating splice site selection. Binds preferentially RNA with A/C rich sequences and poly-C stretches. (570 aa)    
Predicted Functional Partners:
fubp3
Far upstream element (FUSE)-binding protein 3.
      
 0.894
puf60b
Poly(U)-binding-splicing factor PUF60-B; DNA- and RNA-binding protein, involved in transcription repression and pre-mRNA splicing.
    
 
 0.876
luc7l3
LUC7-like 3 pre-mRNA-splicing factor.
   
  
 0.770
rrp9
Ribosomal RNA-processing 9, U3 small nucleolar RNA-binding protein.
      
 0.748
khdrbs2
KH domain-containing, RNA-binding, signal transduction-associated protein 2; RNA-binding protein that plays a role in the regulation of alternative splicing; Belongs to the KHDRBS family.
      
 0.734
lmf1
Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.
      
 0.730
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.727
cherp
Calcium homeostasis endoplasmic reticulum protein.
      
 0.726
khsrp
KH-type-splicing regulatory protein.
      
 0.720
KHDRBS3
KH RNA binding domain containing, signal transduction associated 3.
      
 0.686
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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