STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntd5Ntl-dependent gene 5. (361 aa)    
Predicted Functional Partners:
c6
Complement component 6.
      
 0.718
hp
Haptoglobin.
    
 0.672
mllt1b
MLLT1 super elongation complex subunit b.
      
 0.662
LOC108179231
Si:ch211-212c13.8.
    
 0.609
mex3b
Mex-3 RNA-binding family member B.
    
 0.582
X1WBT0_DANRE
Si:dkey-105h12.2.
    
 0.579
c5
Complement component 5.
    
 0.570
a2ml-2
Alpha-2-macroglobulin-like.
    
 0.569
zmp:0000000760
Zmp:0000000760.
    
 
 0.552
chst2a
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.489
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.