STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabl3Rab-like protein 3; Belongs to the small GTPase superfamily. Rab family. (233 aa)    
Predicted Functional Partners:
RAP1GDS1
Rap1 GTPase-GDP dissociation stimulator 1.
    
 
 0.840
rab44
RAB44, member RAS oncogene family.
      
 0.743
rabl6a
RAB, member RAS oncogene family-like 6a.
      
 0.718
spryd3
SPRY domain-containing 3.
      
 0.678
fhl3a
Four and a half LIM domains 3a.
      
 0.665
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 
 0.659
gal3st3
Galactose-3-O-sulfotransferase 3.
      
 0.648
rab3gap1
Rab3 GTPase-activating protein catalytic subunit; Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP (By similarity).
   
  
 0.623
rab24
RAB24, member RAS oncogene family.
   
  
 0.617
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
   
  
 0.597
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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