Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itgbl1Integrin, beta-like 1. (406 aa)    
Predicted Functional Partners:
itgae.2
Integrin, alpha E, tandem duplicate 2; Belongs to the integrin alpha chain family.
    
 0.959
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
    
 0.953
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.939
itga2b
Integrin, alpha 2b (Platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B); Belongs to the integrin alpha chain family.
    
 0.937
itgb8
Integrin beta; Belongs to the integrin beta chain family.
     
0.935
itgb2
Integrin beta.
   
 
0.916
itgb4
Integrin beta.
     
0.913
itgb5
Integrin beta; Belongs to the integrin beta chain family.
     
0.913
itgb7
Integrin beta; Belongs to the integrin beta chain family.
     
0.912
itgb3b
Integrin beta; Belongs to the integrin beta chain family.
   
 
0.910
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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