Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
got2aAspartate aminotransferase. (428 aa)    
Predicted Functional Partners:
mdh2
Malate dehydrogenase.
   
 0.999
gpt2
Glutamic pyruvate transaminase (alanine aminotransferase) 2.
   
 0.996
gpt2l
Alanine aminotransferase 2-like; Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.
   
 0.993
cs
Citrate synthase, mitochondrial.
   
 0.993
ENSDARP00000134476
Si:ch211-217a12.1.
   
 0.992
glud1b
Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.987
mdh1aa
Malate dehydrogenase.
   
 0.983
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
 0.983
glud1a
Glutamate dehydrogenase 1a; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.982
got1
Aspartate aminotransferase.
   
  0.982
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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