STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jagn1aProtein jagunal homolog 1-A; Endoplasmic reticulum transmembrane protein involved in vesicle-mediated transport, which is required for neutrophil function. Belongs to the jagunal family. (183 aa)    
Predicted Functional Partners:
ptbp2a
Polypyrimidine tract-binding protein 2a.
      
 0.856
slco3a1
Solute carrier organic anion transporter family member.
   
  
 0.813
ptbp2b
Polypyrimidine tract-binding protein 2b.
      
 0.673
zmynd8
Zinc finger, MYND-type-containing 8.
      
 0.647
rcor2
REST corepressor 2; May act as a component of a corepressor complex that represses transcription; Belongs to the CoREST family.
   
  
 0.574
p4htm
Prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum).
      
 0.540
creg1
Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family.
      
 0.494
ARSB
Arylsulfatase B.
      
 0.480
evi5b
Ecotropic viral integration site 5b.
      
 0.479
gnb1l
Guanine nucleotide-binding protein (G protein), beta polypeptide 1-like.
      
 0.477
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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