Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rab32bRAB32b, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
vat1
Synaptic vesicle membrane protein VAT-1 homolog.
   
  
 0.729
rmdn3
Regulator of microtubule dynamics 3.
      
 0.720
gak
Cyclin G-associated kinase.
    
 
 0.704
sh3glb1a
SH3-domain GRB2-like endophilin B1a.
      
 0.669
pmela
Premelanosome protein a.
      
 0.596
gja5b
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.595
or125-5
Olfactory receptor.
      
 0.595
or118-2
Olfactory receptor.
      
 0.595
aifm2
Apoptosis-inducing factor mitochondria-associated 2.
      
 0.565
sh3glb1b
SH3-domain GRB2-like endophilin B1b.
      
 0.564
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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