Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smtnl1Smoothelin-like 1. (401 aa)    
Predicted Functional Partners:
rtn4r
Reticulon 4 receptor.
      
 0.707
mfsd6l
Major facilitator superfamily domain-containing protein 6-like.
      
 0.668
mybphb
Myosin-binding protein Hb.
   
 
 0.607
rtn4rl2b
Reticulon 4 receptor-like 2b.
      
 0.605
kif19
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.595
lmod2a
Leiomodin 2 (cardiac) a.
   
  
 0.477
LOC100329748
Myosin heavy chain 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.464
sfmbt2
Scm-like with four mbt domains 2.
   
  
 0.463
hdr
Hematopoietic death receptor.
      
 0.455
tnnc1b
Troponin C type 1b (slow).
   
  
 0.453
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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