STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smtnl1Smoothelin-like 1. (401 aa)    
Predicted Functional Partners:
rtn4rl2b
Reticulon 4 receptor-like 2b.
      
 0.706
mybphb
Myosin-binding protein Hb.
   
 
 0.685
ldb3b
LIM domain-binding 3b.
   
 
 0.678
smtnb
Smoothelin b.
  
  
0.653
E7EYZ7_DANRE
Si:ch211-195o20.7.
  
 
 
0.627
ldb3a
Cypher/ZASP splice variant 1 gamma.
   
 
 0.623
smtna
Smoothelin a.
  
  
0.615
rtn4r
Reticulon 4 receptor.
      
 0.585
pdlim5b
PDZ and LIM domain 5b.
   
 
 0.577
LOC100329748
Myosin heavy chain 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.576
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.