Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSDARP00000060652Si:ch211-57i17.5. (199 aa)    
Predicted Functional Partners:
whrna
Whirlin a.
    
 
 0.957
whrnb
Whirlin b.
    
 
 0.957
adgrv1
Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.
      
 0.953
pdzd7a
PDZ domain-containing 7a.
    
 
 0.877
pcdh15b
Protocadherin-related 15b.
     
 0.877
cdh23
Cadherin-related 23.
     
 0.819
pcdh15a
Protocadherin-related 15a.
     
 0.819
ush1gb
Usher syndrome 1Gb (autosomal recessive).
    
 0.811
ush1c
Usher syndrome 1C (Autosomal recessive, severe).
    
 
 0.806
myo7ab
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  
 0.800
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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