STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmdn3Regulator of microtubule dynamics 3. (476 aa)    
Predicted Functional Partners:
vat1
Synaptic vesicle membrane protein VAT-1 homolog.
   
  
 0.821
knl1
Kinetochore scaffold 1.
  
  
 0.756
rab32b
RAB32b, member RAS oncogene family.
      
 0.742
sh3glb1a
SH3-domain GRB2-like endophilin B1a.
      
 0.669
aifm2
Apoptosis-inducing factor mitochondria-associated 2.
  
  
 0.585
scp2a
Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.
   
  
 0.584
tomm22
Translocase of Outer mitochondrial membrane 22 homolog (Yeast).
   
 
 0.574
sh3glb1b
SH3-domain GRB2-like endophilin B1b.
   
  
 0.565
cyb5r1
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
  
  
 0.542
aasdh
Beta-alanine-activating enzyme; Covalently binds beta-alanine in an ATP-dependent manner to form a thioester bond with its phosphopantetheine group and transfers it to an, as yet, unknown acceptor. May be required for a post- translational protein modification or for post-transcriptional modification of an RNA.
     
 0.537
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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