Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rmdn3Regulator of microtubule dynamics 3. (476 aa)    
Predicted Functional Partners:
knl1
Kinetochore scaffold 1.
  
  
 0.743
vat1
Synaptic vesicle membrane protein VAT-1 homolog.
   
  
 0.725
rab32b
RAB32b, member RAS oncogene family.
      
 0.720
gpam
Glycerol-3-phosphate acyltransferase 1, mitochondrial.
  
 
 0.682
sh3glb1a
SH3-domain GRB2-like endophilin B1a.
      
 0.666
lpcat4
Lysophosphatidylcholine acyltransferase 4.
     
 0.660
taz
Tafazzin family protein; Belongs to the taffazin family.
   
 
 0.635
agpat2
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.624
agk
Acylglycerol kinase, mitochondrial; Lipid kinase that can phosphorylate both monoacylglycerol and diacylglycerol to form lysophosphatidic acid (LPA) and phosphatidic acid (PA), respectively (By similarity). Phosphorylates ceramide but not sphingosine (By similarity). Phosphorylates 1,2-dioleoylglycerol more rapidly than 2,3-dioleoylglycerol (By similarity). Independently of its lipid kinase activity, acts as a component of the TIM22 complex (By similarity). The TIM22 complex mediates the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane by [...]
  
 
 0.609
crls1
Cardiolipin synthase 1.
  
 
 0.601
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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