Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab11aNovel protein similar to vertebrate Ras family. (215 aa)    
Predicted Functional Partners:
rab11fip1a
RAB11 family-interacting protein 1 (class I) a.
    
 0.986
rab11fip2
RAB11 family-interacting protein 2 (class I).
    
 0.980
rab11fip1b
RAB11 family-interacting protein 1 (class I) b.
    
 0.976
rab11fip5a
RAB11 family-interacting protein 5a (class I).
    
 0.973
LOC570939
Uncharacterized protein.
    
 0.952
rab11al
RAB11a, member RAS oncogene family,-like.
     
  0.938
myo5b
Myosin VB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.922
rab11ba
RAB11B, member RAS oncogene family, a.
     
  0.871
rab11bb
RAB11B, member RAS oncogene family, b.
     
  0.871
rab11fip3
Rab11 family-interacting protein 3.
    
 0.832
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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