STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc130Coiled-coil domain-containing protein 130 homolog; Belongs to the CWC16 family. (390 aa)    
Predicted Functional Partners:
prpf19
PRP19/PSO4 homolog (S. cerevisiae).
   
 
 0.965
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 
 0.924
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.924
eftud2
Elongation factor Tu GTP-binding domain-containing 2.
   
   0.922
jupa
Junction plakoglobin a.
   
   0.857
jupb
Junction plakoglobin b.
   
   0.857
cwc22
Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly.
   
  
 0.834
syf2
Pre-mRNA-splicing factor syf2; Involved in pre-mRNA splicing as component of the spliceosome.
   
 0.806
bud31
Protein BUD31 homolog; Involved in pre-mRNA splicing process.
   
 
 0.712
ppie
Peptidylprolyl isomerase E (cyclophilin E).
   
 
 0.698
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.