Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrps28Mitochondrial ribosomal protein S28. (176 aa)    
Predicted Functional Partners:
mrps23
Mitochondrial ribosomal protein S23.
   
 
 0.983
mrps22
Mitochondrial ribosomal protein S22.
   
   0.974
mrps26
Novel protein similar to vertebrate mitochondrial ribosomal protein S26 (MRPS26).
   
 
 0.972
mrps16
Mitochondrial ribosomal protein S16.
   
   0.970
mrps27
Mitochondrial ribosomal protein S27.
   
   0.968
mrps18b
Mitochondrial ribosomal protein S18B.
   
 
 0.962
mrps18c
Mitochondrial ribosomal protein S18C.
   
 
 0.958
mrps21
Mitochondrial ribosomal protein S21.
   
   0.958
mrps11
Novel protein similar to mouse and human mitochondrial ribosomal protein S11 (MRPS11); Belongs to the universal ribosomal protein uS11 family.
   
   0.949
mrps2
Mitochondrial ribosomal protein S2.
   
 
 0.949
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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