Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gypcGlycophorin C (Gerbich blood group). (89 aa)    
Predicted Functional Partners:
epb41b
Erythrocyte membrane protein band 4.1 (Elliptocytosis 1, RH-linked).
    
 
 0.787
cntn2
Contactin 2.
   
 0.743
Nfascb
Uncharacterized protein.
   
 0.706
slc4a1a
Anion exchange protein.
   
 
 0.674
add3b
Adducin 3 (gamma) b.
    
 
 0.577
add2
Adducin 2 (beta).
    
 
 0.568
frmd3
FERM domain-containing 3.
    
 
 0.527
cntn3b
Contactin 3b.
   
 0.520
cntn3a.1
Contactin 3a, tandem duplicate 1.
   
 0.520
cntn5
Contactin-5; Contactins mediate cell surface interactions during nervous system development; Belongs to the immunoglobulin superfamily. Contactin family.
   
 0.520
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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