STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhlhe41Novel protein similar to vertebrate basic helix-loop-helix domain containing, class B, 3 (BHLHB3). (421 aa)    
Predicted Functional Partners:
per2
Period circadian clock 2.
   
 
 0.849
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
   
  
 0.837
arntl1a
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 
 0.833
per3
Period circadian clock 3.
   
 
 0.826
per1b
Period homolog 1b (Drosophila).
   
 
 0.826
per1a
Period circadian clock 1a.
   
 
 0.825
nr1d4a
Nuclear receptor subfamily 1, group D, member 4a.
      
 0.781
npas2
BHLH-PAS transcription factor.
    
 
 0.773
nr1d2a
Nuclear receptor subfamily 1, group D, member 2a.
   
 
 0.760
cry2
Cryptochrome circadian regulator 2.
   
 
 0.742
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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