STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsc22d2KIAA0669-like protein. (556 aa)    
Predicted Functional Partners:
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
      
 0.778
nrbp1
Nuclear receptor-binding protein 1.
   
 
 0.766
fopnl
Fgfr1op N-terminal-like.
      
 0.744
morf4l1
Mortality factor 4-like 1.
      
 0.718
tbl2
Transducin beta-like 2.
    
 
 0.708
sgce
Sarcoglycan, epsilon.
      
 0.691
eme1
Essential meiotic structure-specific endonuclease 1.
      
 0.681
pif1
ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.
      
 0.678
fntb
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
  
 0.673
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
      
 0.668
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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