Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
rbm39bRNA-binding motif protein 39b. (539 aa)    
Predicted Functional Partners:
ENSDARP00000154515
Uncharacterized protein.
   
   0.959
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.950
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 
 0.926
sf1
Splicing factor 1.
   
 
 0.890
rbm25b
RNA-binding motif protein 25b.
   
 
 0.886
rbm25a
RNA-binding motif protein 25a.
   
 
 0.886
srek1
Splicing regulatory glutamine/lysine-rich protein 1.
   
 
 0.882
srsf11
Serine and arginine-rich-splicing factor 11.
   
 
 0.882
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A (Yeast).
   
 
 0.867
eif4a3
Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...]
    
   0.840
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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