STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab11baRAB11B, member RAS oncogene family, a. (218 aa)    
Predicted Functional Partners:
rab11fip1b
RAB11 family-interacting protein 1 (class I) b.
   
 0.862
rab11fip1a
RAB11 family-interacting protein 1 (class I) a.
   
 0.862
rab11fip2
RAB11 family-interacting protein 2 (class I).
   
 0.862
uqcrc2a
Ubiquinol-cytochrome c reductase core protein 2a.
   
 
 0.836
pi4kb
Phosphatidylinositol 4-kinase beta; Phosphorylates phosphatidylinositol (PI) in the first committed step in the production of the second messenger inositol- 1,4,5,-trisphosphate (PIP).
   
 
 0.828
LOC570939
Uncharacterized protein.
    
 0.803
rab11fip5a
RAB11 family-interacting protein 5a (class I).
    
 0.803
rab11fip4a
Rab11 family-interacting protein 4A; Acts as a regulator of endocytic traffic by participating in membrane delivery. Required for the abcission step in cytokinesis, possibly by acting as an 'address tag' delivering recycling endosome membranes to the cleavage furrow during late cytokinesis (By similarity). May play a role in differentiation during retinal development.
    
 
 0.797
mettl7a-2
Methyltransferase-like 7A.
   
 
 0.727
mettl7a
Methyltransferase-like 7A.
   
 
 0.727
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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