Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rab11baRAB11B, member RAS oncogene family, a. (218 aa)    
Predicted Functional Partners:
LOC570939
Uncharacterized protein.
    
 0.946
rab11fip1b
RAB11 family-interacting protein 1 (class I) b.
    
 0.945
rab11fip1a
RAB11 family-interacting protein 1 (class I) a.
    
 0.945
rab11fip2
RAB11 family-interacting protein 2 (class I).
    
 0.945
rab11fip5a
RAB11 family-interacting protein 5a (class I).
    
 0.897
rab11al
RAB11a, member RAS oncogene family,-like.
     
  0.871
rab11a
Novel protein similar to vertebrate Ras family.
     
  0.871
rab11fip4a
Rab11 family-interacting protein 4A; Acts as a regulator of endocytic traffic by participating in membrane delivery. Required for the abcission step in cytokinesis, possibly by acting as an 'address tag' delivering recycling endosome membranes to the cleavage furrow during late cytokinesis (By similarity). May play a role in differentiation during retinal development.
    
 
 0.819
uqcrc2a
Ubiquinol-cytochrome c reductase core protein 2a.
   
 
 0.804
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.723
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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