STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim54Tripartite motif-containing 54. (359 aa)    
Predicted Functional Partners:
trim55a
Tripartite motif-containing 55a.
     
  0.870
trim55b
Tripartite motif-containing 55b.
     
  0.870
uckl1a
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 
 0.785
nkain2
Sodium/potassium-transporting ATPase-interacting 2.
      
 0.722
trim23
Tripartite motif-containing 23.
    
 0.673
rnf207b
RING finger protein 207; Plays a role in cardiac repolarization possibly by stabilizing membrane expression of the potassium channel kcnh6a/zerg, or by assisting its synthesis, folding or export from the endoplasmic reticulum, in a heat shock protein-dependent manner.
      
 0.669
lims2
LIM domain-containing protein.
    
 
 0.667
nkain4
Sodium/potassium-transporting ATPase-interacting 4.
      
 0.640
trim63a
Tripartite motif-containing 63a.
     
  0.639
trim63b
Tripartite motif-containing 63b.
     
  0.639
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.