Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paplnbPapilin b, proteoglycan-like sulfated glycoprotein. (548 aa)    
Predicted Functional Partners:
tmem160
Transmembrane protein 160.
      
 0.957
dpp9
Dipeptidyl-peptidase 9; Belongs to the peptidase S9B family.
      
 0.877
mxra5a
Matrix-remodelling-associated 5a.
    
 0.791
mb
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
    
 
 0.535
ngb
Neuroglobin; Involved in oxygen transport in the brain (By similarity). Hexacoordinate globin, displaying competitive binding of oxygen or the distal His residue to the iron atom. Capable of penetrating cell membranes.
    
 
 0.518
lins1
Lines homolog 1.
      
 0.504
adgb
Androglobin; Belongs to the peptidase C2 family.
      
 0.502
prpf3
PRP3 pre-mRNA-processing factor 3 homolog (yeast).
      
 0.428
r3hcc1
R3H domain and coiled-coil-containing 1.
      
 0.416
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (22%) [HD]