STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paplnbPapilin b, proteoglycan-like sulfated glycoprotein. (548 aa)    
Predicted Functional Partners:
tmem160
Transmembrane protein 160.
      
 0.999
adgb
Androglobin; Belongs to the peptidase C2 family.
      
 0.743
lins1
Lines homolog 1.
      
 0.720
ngb
Neuroglobin; Involved in oxygen transport in the brain (By similarity). Hexacoordinate globin, displaying competitive binding of oxygen or the distal His residue to the iron atom. Capable of penetrating cell membranes.
      
 0.663
mb
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
   
  
 0.530
aopep
Aminopeptidase O (putative).
      
 0.408
prpf3
PRP3 pre-mRNA-processing factor 3 homolog (yeast).
      
 0.403
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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