Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc38Tetratricopeptide repeat protein 38; Belongs to the TTC38 family. (466 aa)    
Predicted Functional Partners:
ces2a
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
      
 0.780
trmu
Mitochondrial tRNA-specific 2-thiouridylase 1; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln). Required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. ATP is required to activate the C2 atom of the wobble base. Belongs to the MnmA/TRMU family.
 
    
 0.714
zgc:158846
Zgc:158846; Belongs to the intermediate filament family.
      
 0.682
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
      
 0.642
lrit2
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.
      
 0.630
kiaa1958
Si:ch211-126i22.5.
      
 0.620
hdhd2
Haloacid dehalogenase-like hydrolase domain-containing protein 2.
      
 0.612
zcchc17
Zinc finger, CCHC domain-containing 17.
      
 0.611
enosf1
Enolase superfamily member 1.
      
 0.548
bms1
BMS1 ribosome biogenesis factor.
      
 0.504
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.