Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
stx11b.2Syntaxin 11b, tandem duplicate 2. (288 aa)    
Predicted Functional Partners:
vamp8
Vesicle-associated membrane protein 8 (Endobrevin).
    
 0.983
ENSDARP00000142540
Si:ch73-234b20.5.
    
 0.981
stxbp5l
Syntaxin-binding protein 5-like; May play a role in vesicle trafficking and exocytosis. Belongs to the WD repeat L(2)GL family.
    
 0.979
sybl1
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.974
vamp5
Vesicle-associated membrane protein 5.
    
 0.972
vamp3
Vesicle-associated membrane protein 3 (Cellubrevin).
    
 0.972
vamp4
Vesicle-associated membrane protein 4.
    
 0.971
zgc:101731
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.969
snap23.2
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.966
stx7l
Syntaxin 7-like; Belongs to the syntaxin family.
    
0.960
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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