STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1QFG5_DANRESi:dkey-177p2.6. (285 aa)    
Predicted Functional Partners:
zfyve21
Zinc finger, FYVE domain-containing 21.
      
 0.744
ect2l
Coiled-coil domain-containing 28A.
      
 0.744
pinx1
PIN2 (TERF1)-interacting telomerase inhibitor 1.
      
 0.742
ciao2b
Cytosolic iron-sulfur assembly component 2B.
      
 0.742
znf593
Zinc finger protein 593.
      
 0.724
ndufb2
NADH:ubiquinone oxidoreductase subunit B2.
      
 0.715
b2ml
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
  
 0.685
rcan3
Regulator of calcineurin family member 3.
      
 0.669
calm3b
Calmodulin 3b (phosphorylase kinase, delta).
   
  
 0.669
calm3a
Calmodulin 3a (phosphorylase kinase, delta).
      
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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