Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
syndig1lSynapse differentiation-inducing gene protein 1-like. (258 aa)    
Predicted Functional Partners:
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase; Catalyzes the hydrolysis of glucose from the disaccharide unit linked to hydroxylysine residues of collagen and collagen-like proteins; Belongs to the glycosyl hydrolase 65 family.
      
 0.953
LOC792447
Gsg1-like 2a.
      
 0.934
cnih2
Protein cornichon homolog 2; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs); Belongs to the cornichon family.
      
 0.799
shisa3
Shisa family member 3.
   
  
 0.787
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.782
gsg1l
Germ cell-specific gene 1-like protein; As a component of the AMPAR complex, modifies AMPA receptor (AMPAR) gating.
      
 0.739
cnih3
Cornichon family AMPA receptor auxiliary protein 3.
      
 0.735
shisa6
Uncharacterized protein.
      
 0.734
dspa
Desmoplakin a.
      
 0.720
cacng1a
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
      
 0.719
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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