STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syndig1lSynapse differentiation-inducing gene protein 1-like. (258 aa)    
Predicted Functional Partners:
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase; Catalyzes the hydrolysis of glucose from the disaccharide unit linked to hydroxylysine residues of collagen and collagen-like proteins; Belongs to the glycosyl hydrolase 65 family.
      
 0.973
LOC792447
Gsg1-like 2a.
      
 0.932
cnih2
Protein cornichon homolog 2; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs); Belongs to the cornichon family.
   
  
 0.847
shisa3
Shisa family member 3.
   
  
 0.845
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.843
cnih3
Cornichon family AMPA receptor auxiliary protein 3.
   
  
 0.841
shisa6
Uncharacterized protein.
      
 0.836
gsg1l
Germ cell-specific gene 1-like protein; As a component of the AMPAR complex, modifies AMPA receptor (AMPAR) gating.
   
  
 0.745
dspa
Desmoplakin a.
      
 0.742
cacng1a
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
      
 0.736
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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