Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E7F6D6_DANRE | cbx3b | ENSDARP00000127080 | ENSDARP00000123074 | Si:ch1073-174d20.2. | Chromobox homolog 3b. | 0.479 |
E7F6D6_DANRE | tpd52l1 | ENSDARP00000127080 | ENSDARP00000062401 | Si:ch1073-174d20.2. | Zgc:110003 protein. | 0.560 |
cbx3b | E7F6D6_DANRE | ENSDARP00000123074 | ENSDARP00000127080 | Chromobox homolog 3b. | Si:ch1073-174d20.2. | 0.479 |
cbx3b | ccnd2b | ENSDARP00000123074 | ENSDARP00000094056 | Chromobox homolog 3b. | Cyclin D2, b; Belongs to the cyclin family. | 0.619 |
cbx3b | orc4 | ENSDARP00000123074 | ENSDARP00000130427 | Chromobox homolog 3b. | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | 0.497 |
cbx3b | top1 | ENSDARP00000123074 | ENSDARP00000106197 | Chromobox homolog 3b. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.406 |
cbx3b | top1l | ENSDARP00000123074 | ENSDARP00000065948 | Chromobox homolog 3b. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.526 |
cbx3b | tpd52l1 | ENSDARP00000123074 | ENSDARP00000062401 | Chromobox homolog 3b. | Zgc:110003 protein. | 0.802 |
cbx3b | wee2 | ENSDARP00000123074 | ENSDARP00000109848 | Chromobox homolog 3b. | Wee1-like protein kinase 2; Oocyte-specific protein tyrosine kinase that phosphorylates and inhibits cdk1 and acts as a key regulator of meiosis. Required to maintain meiotic arrest in oocytes by phosphorylating cdk1 at 'Tyr-15', leading to inhibit cdk1 activity and prevent meiotic reentry (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. WEE1 subfamily. | 0.547 |
cbx3b | zgc:173742 | ENSDARP00000123074 | ENSDARP00000009334 | Chromobox homolog 3b. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.552 |
ccnd2b | cbx3b | ENSDARP00000094056 | ENSDARP00000123074 | Cyclin D2, b; Belongs to the cyclin family. | Chromobox homolog 3b. | 0.619 |
ccnd2b | orc4 | ENSDARP00000094056 | ENSDARP00000130427 | Cyclin D2, b; Belongs to the cyclin family. | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | 0.526 |
ccnd2b | tpd52l1 | ENSDARP00000094056 | ENSDARP00000062401 | Cyclin D2, b; Belongs to the cyclin family. | Zgc:110003 protein. | 0.669 |
ccnd2b | wee2 | ENSDARP00000094056 | ENSDARP00000109848 | Cyclin D2, b; Belongs to the cyclin family. | Wee1-like protein kinase 2; Oocyte-specific protein tyrosine kinase that phosphorylates and inhibits cdk1 and acts as a key regulator of meiosis. Required to maintain meiotic arrest in oocytes by phosphorylating cdk1 at 'Tyr-15', leading to inhibit cdk1 activity and prevent meiotic reentry (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. WEE1 subfamily. | 0.520 |
ccnd2b | zgc:173742 | ENSDARP00000094056 | ENSDARP00000009334 | Cyclin D2, b; Belongs to the cyclin family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.404 |
mad2l2 | tpd52l1 | ENSDARP00000062253 | ENSDARP00000062401 | Mitotic spindle assembly checkpoint protein MAD2B; Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit rev3l and the inserter polymerase rev1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the [...] | Zgc:110003 protein. | 0.716 |
orc4 | cbx3b | ENSDARP00000130427 | ENSDARP00000123074 | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | Chromobox homolog 3b. | 0.497 |
orc4 | ccnd2b | ENSDARP00000130427 | ENSDARP00000094056 | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | Cyclin D2, b; Belongs to the cyclin family. | 0.526 |
orc4 | tpd52l1 | ENSDARP00000130427 | ENSDARP00000062401 | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | Zgc:110003 protein. | 0.566 |
orc4 | zgc:173742 | ENSDARP00000130427 | ENSDARP00000009334 | Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.417 |
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