Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cadm1bCell adhesion molecule 1b. (370 aa)    
Predicted Functional Partners:
nectin3b
Nectin-3-like protein; May play a role in cell-cell adhesion; Belongs to the nectin family.
    
0.912
cadpsb
Ca2+-dependent activator protein for secretion b.
   
  
 0.693
lrrtm1
Leucine-rich repeat transmembrane neuronal 1.
    
 0.611
lrrc4ba
Leucine-rich repeat-containing 4Ba.
    
 0.611
vcam1b
Vascular cell adhesion molecule 1b.
    
0.549
vcam1a
Vascular cell adhesion molecule 1a.
    
 0.521
nvl
Nuclear VCP-like.
    
 
 0.486
nlgn1
Neuroligin 1.
    
 
 0.469
tnfb
Tumor necrosis factor b (TNF superfamily, member 2).
      
 0.466
anapc16
Anaphase-promoting complex subunit 16.
      
 0.462
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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