STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp9Matrix metallopeptidase 9. (680 aa)    
Predicted Functional Partners:
timp2a
Tissue inhibitor of metalloproteinase 2.
    
 
 0.964
timp2b
TIMP metallopeptidase inhibitor 2b.
   
 0.938
timp4.3
TIMP metallopeptidase inhibitor 4, tandem duplicate 3.
    
 
 0.936
timp4.1
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 
 0.919
tnfb
Tumor necrosis factor b (TNF superfamily, member 2).
   
  
 0.890
il1b
Interleukin-1.
   
 
 0.886
il10
Interleukin-10.
   
  
 0.852
cdh1
Cadherin 1, type 1, E-cadherin (epithelial); Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.836
ctsk
Cathepsin K; Belongs to the peptidase C1 family.
   
 0.835
stat3
Signal transducer and activator of transcription.
   
 
 0.831
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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