STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ivdNovel protein similar to human isovaleryl Coenzyme A dehydrogenase (IVD). (418 aa)    
Predicted Functional Partners:
mccc2
Methylcrotonoyl-CoA carboxylase 2 (beta).
 
 
 0.987
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 0.983
A9C3S0_DANRE
Si:ch211-198n5.11.
 
 
 0.980
mccc1
Methylcrotonoyl-CoA carboxylase 1 (alpha).
  
 0.975
echs1
Enoyl CoA hydratase, short chain, 1, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.963
ehhadh
Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.954
hadhab
Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.953
hadhaa
Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.953
acadm
Acyl-CoA dehydrogenase medium chain.
  
0.933
pcca
Propionyl-CoA carboxylase subunit alpha.
  
 0.887
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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